Welcome to AgBioData

AgBioData is a consortium of agricultural biological databases and associated resources working together to ensure standards and best practices for acquisition, display and retrieval of genomic, genetic and breeding data.

Join us by registering for an account!. Registering will provide us information about your interests and database and will add you to the mailing list.

Participating Databases and Resources

  • The Pulse Crop Database (PulseDB) is being developed by the Main Bioinformatics Laboratory at WSU.

  • The Genome Database for Rosaceae is a curated and integrated web-based relational database...

  • MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.

  • WheatIS provide a single-access web base system for the wheat research community

  • GrainGenes, a database for Triticeae and Avena, is a comprehensive resource for molecular and phenotypic information

  • AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.

  • The Arabidopsis Information Resource (TAIR) collects information and maintains a database of genetic and molecular biology data for Arabidopsis thaliana, a widely used model plant.

  • SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally...

  • The Sol Genomics Network (SGN) is a clade-oriented database dedicated to the biology of the Solanaceae family...

  • In the new age of comparative plant biology, we are looking at datasets from numerous inter and intra-specific...

  • This web portal is designed to provide convenient access to peanut genetic and genomic data...

  • It is the mission of NADC to conduct basic and applied research on selected diseases of economic importance to the U.S. livestock and poultry industries.

  • The TreeGenes database and Dendrome project provide custom informatics tools to manage...

  • The i5k Workspace@NAL is a platform for communities around ‘orphaned’ arthropod genome projects to access, visualize, curate and disseminate their data. 

  • CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. 

  • The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL

  • The Genome Database for Vaccinium (GDV) is being developed to house and integrate genomic, genetic and breeding data for blueberry, cranberry and other Vaccinium species.

  • Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and protein reports with orthology, expression, interactions...

  • The Citrus Genome Database, known as CGD, is a USDA and NSF funded resource to enable basic...

  • The Germplasm Resources Information Network (GRIN) web server provides germplasm...

  • The Triticeae Toolbox (T3) is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project...

  • A collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species.

  • The Hardwood Genomics Web serves forest tree scientists by providing online access to hardwood tree genomic...

  • CyVerse is funded by the National Science Foundation’s Directorate for Biological Sciences.

  • Gramene is a curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species.

News & Events

Enjoy your summer, see you again in August!
Posted: 06/03/2021
Dealing with gene models from 50 different reference genomes.  A progress report from MaizeGDB.
Posted: 05/26/2021
The 2021 Bioinformatics Open Source Conference (BOSC) is a forum for developers and users to interact and share research results and ideas in open source bioinformatics and open science.
Posted: 05/04/2021
Monica Poelchau will lead a discussion on new recommendations from the AgBioData GFF3 working group.
Posted: 04/28/2021
Join us to learn how PhyloGenes help you build a more better gene family trees.
Posted: 03/03/2021