Welcome to AgBioData

AgBioData is a consortium of agricultural biological databases and associated resources working together to ensure standards and best practices for acquisition, display and retrieval of genomic, genetic and breeding data.

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Participating Databases and Resources

  • The Enterprise Breeding System (EBS) is an open-source breeding informatics software.

  • GOBii (Genomic Open-source Breeding informatics initiative) is an open-source genomic data management and analysis tool.

  • SorghumBase is a web portal for comparative plant genomics focused on Sorghum crop varieties.

  • The central goal of the Plant Metabolic Network (PMN) is to bring together biochemical pathway databases and research communities focused on plant metabolism.

  • The Pulse Crop Database (PulseDB) is being developed by the Main Bioinformatics Laboratory at WSU.

  • The Genome Database for Rosaceae is a curated and integrated web-based relational database...

  • MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.

  • WheatIS provide a single-access web base system for the wheat research community

  • GrainGenes, a database for Triticeae and Avena, is a comprehensive resource for molecular and phenotypic information

  • AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.

  • The Arabidopsis Information Resource (TAIR) collects information and maintains a database of genetic and molecular biology data for Arabidopsis thaliana, a widely used model plant.

  • SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally...

  • The Sol Genomics Network (SGN) is a clade-oriented database dedicated to the biology of the Solanaceae family...

  • In the new age of comparative plant biology, we are looking at datasets from numerous inter and intra-specific...

  • This web portal is designed to provide convenient access to peanut genetic and genomic data...

  • It is the mission of NADC to conduct basic and applied research on selected diseases of economic importance to the U.S. livestock and poultry industries.

  • The TreeGenes database and Dendrome project provide custom informatics tools to manage...

  • The i5k Workspace@NAL is a platform for communities around ‘orphaned’ arthropod genome projects to access, visualize, curate and disseminate their data. 

  • CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. 

  • The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL

  • The Genome Database for Vaccinium (GDV) is being developed to house and integrate genomic, genetic and breeding data for blueberry, cranberry and other Vaccinium species.

  • Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and protein reports with orthology, expression, interactions...

  • The Citrus Genome Database, known as CGD, is a USDA and NSF funded resource to enable basic...

  • The Germplasm Resources Information Network (GRIN) web server provides germplasm...

  • The Triticeae Toolbox (T3) is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project...

  • A collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species.

  • The Hardwood Genomics Web serves forest tree scientists by providing online access to hardwood tree genomic...

  • CyVerse is funded by the National Science Foundation’s Directorate for Biological Sciences.

  • Gramene is a curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species.

News & Events

AgBioData RCN grant - Eva Huala
Posted: 08/04/2021
Interactions between the phenomics and database communities
Posted: 07/28/2021
Enjoy your summer, see you again in August!
Posted: 06/03/2021
Dealing with gene models from 50 different reference genomes.  A progress report from MaizeGDB.
Posted: 05/26/2021
The 2021 Bioinformatics Open Source Conference (BOSC) is a forum for developers and users to interact and share research results and ideas in open source bioinformatics and open science.
Posted: 05/04/2021