Welcome to AgBioData

AgBioData is a consortium of agricultural biological databases and associated resources working together to ensure standards and best practices for the acquisition, display, and retrieval of genomic, genetic, and breeding data.  Join our mailing list by registering for an account.


    Did you know that AgBioData has a YouTube channel?
    Each monthly seminar is recorded for you to check out at your convenience.

Participating Databases and Resources

  • The Enterprise Breeding System (EBS) is an open-source breeding informatics software.

  • GOBii (Genomic Open-source Breeding informatics initiative) is an open-source genomic data management and analysis tool.

  • SorghumBase is a web portal for comparative plant genomics focused on Sorghum crop varieties.

  • The central goal of the Plant Metabolic Network (PMN) is to bring together biochemical pathway databases and research communities focused on plant metabolism.

  • The Pulse Crop Database (PulseDB) is being developed by the Main Bioinformatics Laboratory at WSU.

  • The Genome Database for Rosaceae is a curated and integrated web-based relational database...

  • MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.

  • WheatIS provide a single-access web base system for the wheat research community

  • GrainGenes, a database for Triticeae and Avena, is a comprehensive resource for molecular and phenotypic information

  • AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products.

  • The Arabidopsis Information Resource (TAIR) collects information and maintains a database of genetic and molecular biology data for Arabidopsis thaliana, a widely used model plant.

  • SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally...

  • The Sol Genomics Network (SGN) is a clade-oriented database dedicated to the biology of the Solanaceae family...

  • In the new age of comparative plant biology, we are looking at datasets from numerous inter and intra-specific...

  • This web portal is designed to provide convenient access to peanut genetic and genomic data...

  • It is the mission of NADC to conduct basic and applied research on selected diseases of economic importance to the U.S. livestock and poultry industries.

  • The TreeGenes database and Dendrome project provide custom informatics tools to manage...

  • The i5k Workspace@NAL is a platform for communities around ‘orphaned’ arthropod genome projects to access, visualize, curate and disseminate their data. 

  • CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. 

  • The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL

  • The Genome Database for Vaccinium (GDV) is being developed to house and integrate genomic, genetic and breeding data for blueberry, cranberry and other Vaccinium species.

  • Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and protein reports with orthology, expression, interactions...

  • The Citrus Genome Database, known as CGD, is a USDA and NSF funded resource to enable basic...

  • The Germplasm Resources Information Network (GRIN) web server provides germplasm...

  • The Triticeae Toolbox (T3) is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project...

  • A collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species.

  • The Hardwood Genomics Web serves forest tree scientists by providing online access to hardwood tree genomic...

  • CyVerse is funded by the National Science Foundation’s Directorate for Biological Sciences.

  • Gramene is a curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species.

News & Events

Wormbase - Karen Yook and Daniela Raciti
Posted: 04/14/2022
The AgBioData steering committee is looking for new members! Send you nomination by April 1st!
Posted: 03/01/2022
2022 AgBioData Community Workshop: Facilitating crosstalk and network building across Working Groups
Posted: 02/01/2022
EMBL-EBI - Baron Koylass and Timothee Cezard
Posted: 01/13/2022
Come to hear about AgBioData on Jan 11th at 2 PM PST (room Palm 1-2).
Posted: 12/13/2021