Databases

List of the agricultural biological databases involved with the AgBioData consortium.
Name URL Contact
YamBase https://www.yambase.org/ Lukas Mueller
WheatIS http://wheatis.org/ Taner Sen
Triticeae toolbox, T3 https://triticeaetoolbox.org/wheat/ Jean-Luc Jannink
TreeGenes https://treegenesdb.org Jill Wegrzyn
The European Variation Archive https://www.ebi.ac.uk/eva/ Timothe Cezard
The Bio-Analytic Resource for Plant Biology (BAR) https://bar.utoronto.ca/ Nicholas Provart
TAIR http://www.arabidopsis.org Tanya Berardini
SweetPotatoBase https://www.sweetpotatobase.org/ Lukas Mueller
SoyBase https://www.soybase.org Rex Nelson
SorghumBase https://www.sorghumbase.org Doreen Ware
Sol Genomics Network https://solgenomics.net/ Lukas Mueller
Pulse Crop Database https://www.pulsedb.org/ Dorrie Main
Plant Metabolic Pathway Databases https://plantcyc.org/ Charles Hawkins
Planteome https://planteome.org/ Pankaj Jaiswal
PeanutBase https://peanutbase.org Sudhansu Dash
National Animal Disease Center https://www.ars.usda.gov/midwest-area/ames/nadc/ Darrell Bayles
MusaBase https://www.musabase.org/ Lukas Mueller
MaizeGDB https://maizegdb.org/ Carson Andorf
Legume Information System https://legumeinfo.org/ Steven Cannon
KitBase http://kitbase.ucdavis.edu/ Rashmi Jain
i5k Workspace@NAL https://i5k.nal.usda.gov/ Chris Childers
Hymenoptera Genome Database http://hymenopteragenome.org/ Christine Elsik
GRIN https://www.ars-grin.gov Gary R. Kinard
Gramene http://www.gramene.org/ Doreen Ware
GrainGenes https://wheat.pw.usda.gov/GG3/ Taner Sen
GOBii https://excellenceinbreeding.org/toolbox/tools/gobii-genomic-data-management-system-gobii-gdm Elizabeth Jones
Genome Database for Vaccinium https://www.vaccinium.org/ Dorrie Main
Genome Database for Rosaceae https://www.rosaceae.org/ Dorrie Main
FAANG https://data.faang.org/home Sarah Dyer
Ensembl https://useast.ensembl.org/index.html Sarah Dyer
EBS (Enterprise Breeding System) https://ebs.excellenceinbreeding.org/ Elizabeth Jones
CyVerse http://www.cyverse.org Jason Williams
Cucurbit Genomics http://cucurbitgenomics.org/ Zhangjun Fei
Crop Ontology https://cropontology.org/ Elizabeth Arnaud
CottonGen https://www.cottongen.org/ Dorrie Main
Citrus Greening https://www.citrusgreening.org/ Surya Saha
Citrus Genome Database https://www.citrusgenomedb.org/ Dorrie Main
CassavaBase https://www.cassavabase.org/ CassavaBase
Bovine Genome Database http://bovinegenome.org/ Christine Elsik
Animal QTLdb http://www.animalgenome.org/cgi-bin/QTLdb/index James Reecy
Alfalfa Breeders Toolbox https://medicago.legumeinfo.org/ Andrew Farmer
AgroPortal http://agroportal.lirmm.fr/ Clement Jonquet
Agbase https://agbase.arizona.edu/ Fiona McCarthy