Databases

List of the agricultural biological databases involved with the AgBioData consortium.
Name URL Contact
YamBase https://www.yambase.org/ Lukas Mueller
TreeGenes https://treegenesdb.org Jill Wegrzyn
TAIR http://www.arabidopsis.org Eva Huala
T3 https://triticeaetoolbox.org/wheat/ Jean-Luc Jannink
SweetPotatoBase https://www.sweetpotatobase.org/ Lukas Mueller
SoyBase https://www.soybase.org David Grant
Sol Genomics Network https://solgenomics.net/ Lukas Mueller
Planteome http://www.planteome.org Pankaj Jaiswal
PeanutBase https://peanutbase.org Ethy Cannon
National Animal Disease Center https://www.ars.usda.gov/midwest-area/ames/nadc/ Darrell Bayles
MusaBase https://www.musabase.org/ Lukas Mueller
MaizeGDB https://maizegdb.org/ Carson Andorf
Legume Information System https://legumeinfo.org/ Steven Cannon
i5K NAL https://i5k.nal.usda.gov/ Chris Childers
Hymenoptera Genome Database http://hymenopteragenome.org/ Christine Elsik
Hardwood Genomics http://www.hardwoodgenomics.org/ Meg Staton
GRIN https://www.ars-grin.gov Peter Bretting
Gramene http://www.gramene.org/ Doreen Ware
GrainGenes https://wheat.pw.usda.gov/GG3/ Taner Sen
Genome Database for Vaccinium https://www.vaccinium.org/ Dorrie Main
Genome Database for Rosaceae https://www.rosaceae.org/ Dorrie Main
CyVerse http://www.cyverse.org Ramona Walls
CottonGen https://www.cottongen.org/ Dorrie Main
Cool Season Food Legume Database https://www.coolseasonfoodlegume.org/ Dorrie Main
Citrus Genome Database https://www.citrusgenomedb.org/ Dorrie Main
CassavaBase https://www.cassavabase.org/ CassavaBase
Bovine Genome Database http://bovinegenome.org/ Christine Elsik
Araport https://www.araport.org Chris Town
Animal QTLdb http://www.animalgenome.org/cgi-bin/QTLdb/index James Reecy
Alfalfa Breeder's Toolbox https://www.alfalfatoolbox.org/ Maria Monteros & Patrick Zhao
AgroPortal http://agroportal.lirmm.fr/ Clement Jonquet
Agbase http://www.agbase.msstate.edu Fiona McCarthy